miRBase entry: cpi-mir-1788

Stem-loop cpi-mir-1788


Accession
MI0029605
Description
Chrysemys picta cpi-mir-1788 precursor miRNA


Sequence

cccucugugugucgGGCUUGUUUUCAGUUGCCUGCgguugguuagaaggacuCAGGCAGCUAAAGCAAGUCUGggacgcgcgaggagaac
.(((((((((.(((((((((((((.(((((((((.((((.........)))))))))))))))))))))))))).))))).)))).....

Structure
----c    -     g             C         C    ggu 
     ccuc ugugu ucgGGCUUGUUUU AGUUGCCUG gguu   u
     |||| ||||| ||||||||||||| ||||||||| ||||   a
     ggag gcgca gGUCUGAACGAAA UCGACGGAC ucag   g
caaga    c     g             -         -    gaa 


Annotation confidence Not enough data
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Genome context
KK085206.1: 12443-12532 [+]

Database links

Mature cpi-miR-1788-5p

Accession MIMAT0037936
Description Chrysemys picta cpi-miR-1788-5p mature miRNA
Sequence 15 - GGCUUGUUUUCAGUUGCCUGC - 35
Evidence experimental
Illumina [1]

Mature cpi-miR-1788-3p

Accession MIMAT0037937
Description Chrysemys picta cpi-miR-1788-3p mature miRNA
Sequence 53 - CAGGCAGCUAAAGCAAGUCUG - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196