miRBase entry: cpi-mir-1805

Stem-loop cpi-mir-1805


Accession
MI0029607
Description
Chrysemys picta cpi-mir-1805 precursor miRNA


Sequence

aguggaauauucugggAGUUGUAGUCUUUCAAACAGAgcucugcaaguauauaccUGUAUUGGAACACUACAGCUCcccgaacuuccuaguguc
...((((..(((.((((((((((((.((((((((((..................)))).)))))).)))))))))))).))).)))).......

Structure
----agu    ua   u            C      -    Agcucugc 
       ggaa  uuc gggAGUUGUAGU UUUCAA ACAG        a
       ||||  ||| |||||||||||| |||||| ||||         
       ccuu  aag ccCUCGACAUCA AAGGUU UGUc        a
cugugau    -c   c            C      A    cauauaug 


Annotation confidence Not enough data
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Genome context
KK082916.1: 7072762-7072855 [-]

Database links

Mature cpi-miR-1805-5p

Accession MIMAT0037939
Description Chrysemys picta cpi-miR-1805-5p mature miRNA
Sequence 17 - AGUUGUAGUCUUUCAAACAGA - 37
Evidence experimental
Illumina [1]

Mature cpi-miR-1805-3p

Accession MIMAT0037940
Description Chrysemys picta cpi-miR-1805-3p mature miRNA
Sequence 56 - UGUAUUGGAACACUACAGCUC - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196