miRBase entry: cpi-mir-2970

Stem-loop cpi-mir-2970


Accession
MI0029610
Description
Chrysemys picta cpi-mir-2970 precursor miRNA


Sequence

ggucucuuccugucacugcaGACAGUCAGUAGUUGGUCUGgcgagagcaggaauucUCAGAUCACCUCUUGGCUGUGAGugguggugcagagaacac
(.(((((.(...(((((((..((((((((.((.((((((((.(((........))))))))))).)).))))))))..))))))).).))))).)..

Structure
-- g     u cug       aG        U  U        c   agc 
  g ucucu c   ucacugc  ACAGUCAG AG UGGUCUGg gag   a
  | ||||| |   |||||||  |||||||| || |||||||| |||    
  c agaga g   ggugguG  UGUCGGUU UC ACUAGACU cuu   g
ca a     c --u       AG        C  C        -   aag 


Annotation confidence Not enough data
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Genome context
KK083069.1: 931102-931198 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cpi-mir-2970
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-2970-5p

Accession MIMAT0037945
Description Chrysemys picta cpi-miR-2970-5p mature miRNA
Sequence 21 - GACAGUCAGUAGUUGGUCUG - 40
Evidence experimental
Illumina [1]

Mature cpi-miR-2970-3p

Accession MIMAT0037946
Description Chrysemys picta cpi-miR-2970-3p mature miRNA
Sequence 57 - UCAGAUCACCUCUUGGCUGUGAG - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196