Stem-loop cpi-mir-1729

Accession

MI0029616

Description

Chrysemys picta cpi-mir-1729 precursor miRNA

Sequence

ucuggagcugauccugAAGCCCUUACUCACAUGAGCAgucccacauaagucCUCAAGGUGAGUAAGGGCUGCGagauuggacccuaaauacc
...((..((((((.((.(((((((((((((.((((.(.(........).).))))..))))))))))))).)).))))))..))........

Structure

-----ucu  ag      c  A             -A    C g ccc 
        gg  cugauc ug AGCCCUUACUCAC  UGAG A u   a
        ||  |||||| || |||||||||||||  |||| | |    
        cc  gguuag GC UCGGGAAUGAGUG  ACUC u a   c
ccauaaau  ca      a  G             GA    c g aua 

Annotation confidence Not enough data

Genome context

KK088243.1: 4156550-4156641 [-]

Mature cpi-miR-1729-5p

• Accession: MIMAT0037954
• Description: Chrysemys picta cpi-miR-1729-5p mature miRNA
• Sequence: 17 - AAGCCCUUACUCACAUGAGCA - 37
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-1729-3p

• Accession: MIMAT0037955
• Description: Chrysemys picta cpi-miR-1729-3p mature miRNA
• Sequence: 52 - CUCAAGGUGAGUAAGGGCUGCG - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196