miRBase entry: cpi-mir-9581

Stem-loop cpi-mir-9581


Accession
MI0029618
Description
Chrysemys picta cpi-mir-9581 precursor miRNA


Sequence

uucggggccagcgccucGGCUGGCGUACGUUGGCGUUGCuccauugaagccagcagcUACGCCGACGUGAGCCAGCUGAugcucuggcccucgg
..(((((((((.((.(((((((((.(((((((((((.(((...(((....))).))).))))))))))).))))))))).)).))))))).)).

Structure
uu  -       c  c         G           U   cca   a 
  cg gggccag gc ucGGCUGGC UACGUUGGCGU GCu   uug a
  || ||||||| || ||||||||| ||||||||||| |||   |||  
  gc cccgguc cg AGUCGACCG GUGCAGCCGCA cga   gac g
-g  u       u  u         A           U   --c   c 


Annotation confidence Not enough data
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Genome context
KK083124.1: 540566-540659 [-]

Database links

Mature cpi-miR-9581-5p

Accession MIMAT0037958
Description Chrysemys picta cpi-miR-9581-5p mature miRNA
Sequence 18 - GGCUGGCGUACGUUGGCGUUGC - 39
Evidence experimental
Illumina [1]

Mature cpi-miR-9581-3p

Accession MIMAT0037959
Description Chrysemys picta cpi-miR-9581-3p mature miRNA
Sequence 58 - UACGCCGACGUGAGCCAGCUGA - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196