Stem-loop cpi-mir-9597

Accession

MI0029634

Description

Chrysemys picta cpi-mir-9597 precursor miRNA

Sequence

cuugggcccAGAUCCUAAGACGUAUUUAGAugcuuaacauuagauaccUAAAUAUCUUUCAGGAUCUGGgcccuga
...(((((((((((((.(((.((((((((.((((.......)).)).)))))))).))).)))))))))))))...

Structure

cuu             A   C        A  -  ua 
   gggcccAGAUCCU AGA GUAUUUAG ug cu  a
   ||||||||||||| ||| |||||||| || ||  c
   cccgGGUCUAGGA UUU UAUAAAUc au ga  a
agu             C   C        c  a  uu 

Annotation confidence Not enough data

Genome context

chr6: 5703773-5703848 [+]

Mature cpi-miR-9597-5p

• Accession: MIMAT0037990
• Description: Chrysemys picta cpi-miR-9597-5p mature miRNA
• Sequence: 10 - AGAUCCUAAGACGUAUUUAGA - 30
• Evidence: experimental ; Illumina [1]

Mature cpi-miR-9597-3p

• Accession: MIMAT0037991
• Description: Chrysemys picta cpi-miR-9597-3p mature miRNA
• Sequence: 49 - UAAAUAUCUUUCAGGAUCUGG - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196