miRBase entry: cpi-mir-15c

Stem-loop cpi-mir-15c


Accession
MI0029635
Description
Chrysemys picta cpi-mir-15c precursor miRNA


Sequence

ccuuaaaguacucUAGCAGCACAUCAUGGUUUGcaugcucuagcaaaaaugcGAAUCAUUAUUUGCUGCUUUggaaauuuaagga
(((((((...((..(((((((.((.(((((((((((((....)))....)))))))))).)).)))))))..))...))))))).

Structure
-       gua  cU       C  C          ----   u 
 ccuuaaa   cu  AGCAGCA AU AUGGUUUGca    ugc c
 |||||||   ||  ||||||| || ||||||||||    |||  
 ggaauuu   gg  UCGUCGU UA UACUAAGcgu    acg u
a       aaa  UU       U  U          aaaa   a 


Annotation confidence Not enough data
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Genome context
KK088236.1: 7080688-7080772 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-15c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-15c-5p

Accession MIMAT0037992
Description Chrysemys picta cpi-miR-15c-5p mature miRNA
Sequence 14 - UAGCAGCACAUCAUGGUUUG - 33
Evidence experimental
Illumina [1]

Mature cpi-miR-15c-3p

Accession MIMAT0037993
Description Chrysemys picta cpi-miR-15c-3p mature miRNA
Sequence 53 - GAAUCAUUAUUUGCUGCUUU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196