miRBase entry: cpi-mir-16b

Stem-loop cpi-mir-16b


Accession
MI0029636
Description
Chrysemys picta cpi-mir-16b precursor miRNA


Sequence

uauacucguuccgcccUAGCAGCACGUAAAUAUUGGUGuaguaaaguaaaucuuaaaccCCAAUAUUAUUGUGCUGCUUAAgcguggcaga
.......(((.(((...(((((((((..((((((((.((....(((.....)))..)).))))))))..)))))))))...))).)))...

Structure
uauacuc   c   ccU         UA        U  agua   u 
       guu cgc   AGCAGCACG  AAUAUUGG Gu    aag a
       ||| |||   |||||||||  |||||||| ||    ||| a
       cgg gcg   UCGUCGUGU  UUAUAACC ca    uuc a
----aga   u   AAU         UA        c  --aa   u 


Annotation confidence Not enough data
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Genome context
KK088236.1: 7080517-7080607 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cpi-mir-16b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cpi-miR-16b-5p

Accession MIMAT0037994
Description Chrysemys picta cpi-miR-16b-5p mature miRNA
Sequence 17 - UAGCAGCACGUAAAUAUUGGUG - 38
Evidence experimental
Illumina [1]

Mature cpi-miR-16b-3p

Accession MIMAT0037995
Description Chrysemys picta cpi-miR-16b-3p mature miRNA
Sequence 60 - CCAAUAUUAUUGUGCUGCUUAA - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196