miRBase entry: ami-let-7b

Stem-loop ami-let-7b


Accession
MI0029643
Description
Alligator mississippiensis ami-let-7b precursor miRNA


Sequence

gcucuggcaggaUGAGGUAGUAGGUUGUGUGGUUucaggguagugauuuugccccaaucaggagauaaCUAUACAACCUACUGCCUUCCCug
.......((((..(((((((((((((((((((((...((((((.....))))))..(((....)))))))))))))))))))))))).))))

Structure
gcucugg    aU                     ---------uca      u 
       cagg  GAGGUAGUAGGUUGUGUGGUU            ggguag g
       ||||  |||||||||||||||||||||            |||||| a
       guCC  UUCCGUCAUCCAACAUAUCaa            cccguu u
-------    -C                     uagaggacuaac      u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AKHW03000678.1: 7945988-7946079 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-let-7b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-let-7b-5p

Accession MIMAT0038003
Description Alligator mississippiensis ami-let-7b-5p mature miRNA
Sequence 13 - UGAGGUAGUAGGUUGUGUGGUU - 34
Evidence experimental
Illumina [1]

Mature ami-let-7b-3p

Accession MIMAT0038004
Description Alligator mississippiensis ami-let-7b-3p mature miRNA
Sequence 69 - CUAUACAACCUACUGCCUUCCC - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196