miRBase entry: ami-let-7e

Stem-loop ami-let-7e


Accession
MI0029647
Description
Alligator mississippiensis ami-let-7e precursor miRNA


Sequence

guccuugaggcUGAGGUAGUAGAUUGAAUAGUUguggaguccuacccucccuuugagcuaaCUAUACAAUCUACUGUCUUUccuaaggagac
.(((((.(((..((((((((((((((.((((((((((((.......))))......)).)))))).)))))))))))))).))))))))...

Structure
--g     g   cU              A      -  ------    uc 
   uccuu agg  GAGGUAGUAGAUUG AUAGUU gu      ggag  c
   ||||| |||  |||||||||||||| |||||| ||      ||||  u
   aggaa ucc  UUCUGUCAUCUAAC UAUCaa cg      ccuc  a
cag     -   -U              A      u  aguuuc    cc 


Annotation confidence Not enough data
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Genome context
AKHW03003787.1: 755426-755517 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-let-7e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-let-7e-5p

Accession MIMAT0038010
Description Alligator mississippiensis ami-let-7e-5p mature miRNA
Sequence 12 - UGAGGUAGUAGAUUGAAUAGUU - 33
Evidence experimental
Illumina [1]

Mature ami-let-7e-3p

Accession MIMAT0038011
Description Alligator mississippiensis ami-let-7e-3p mature miRNA
Sequence 62 - CUAUACAAUCUACUGUCUUU - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196