Stem-loop ami-let-7i

Accession

MI0029651

Description

Alligator mississippiensis ami-let-7i precursor miRNA

Sequence

cgguccuggcUGAGGUAGUAGUUUGUGCUGUuggucggguugugacacugcccgcuguggagauaaCUGCGCAAGCUACUGCCUUGCUagugcg
..((.(((((.(((((((((((((((((.(((((.(((((.((...)).)))))))........))).)))))))))))))))))))))).)).

Structure

cg  c     U                 U   --------  u     u  g 
  gu cuggc GAGGUAGUAGUUUGUGC GUu        gg cgggu gu  
  || ||||| ||||||||||||||||| |||        || ||||| || a
  cg gaUCG UUCCGUCAUCGAACGCG Caa        uc gcccg ca  
-g  u     -                 U   uagaggug  -     u  c 

Annotation confidence Not enough data

Genome context

AKHW03000416.1: 29268632-29268725 [+]

Mature ami-let-7i-5p

• Accession: MIMAT0038016
• Description: Alligator mississippiensis ami-let-7i-5p mature miRNA
• Sequence: 11 - UGAGGUAGUAGUUUGUGCUGU - 31
• Evidence: experimental ; Illumina [1]

Mature ami-let-7i-3p

• Accession: MIMAT0038017
• Description: Alligator mississippiensis ami-let-7i-3p mature miRNA
• Sequence: 67 - CUGCGCAAGCUACUGCCUUGCU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196