miRBase entry: ami-mir-10a

Stem-loop ami-mir-10a


Accession
MI0029663
Description
Alligator mississippiensis ami-mir-10a precursor miRNA


Sequence

gucuucuauaugUACCCUGUAGAUCCGAAUUUGUGuaaaggaaguugcgucACAAAUUCGUAUCUAGGGGAAUauguaguugacacaa
(((..((((((((.((((.(((((.((((((((((...............)))))))))).))))))))).))))))))..)))....

Structure
----   uu        A    G     C          uaaagg 
    guc  cuauaugU CCCU UAGAU CGAAUUUGUG      a
    |||  |||||||| |||| ||||| ||||||||||      a
    cag  gauguaUA GGGG AUCUA GCUUAAACAc      g
aaca   uu        A    -     U          ugcguu 


Annotation confidence Not enough data
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Genome context
AKHW03000817.1: 3410183-3410270 [-]

Database links

Mature ami-miR-10a-5p

Accession MIMAT0038030
Description Alligator mississippiensis ami-miR-10a-5p mature miRNA
Sequence 13 - UACCCUGUAGAUCCGAAUUUGUG - 35
Evidence experimental
Illumina [1]

Mature ami-miR-10a-3p

Accession MIMAT0038031
Description Alligator mississippiensis ami-miR-10a-3p mature miRNA
Sequence 52 - ACAAAUUCGUAUCUAGGGGAAU - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196