miRBase entry: ami-mir-18

Stem-loop ami-mir-18


Accession
MI0029673
Description
Alligator mississippiensis ami-mir-18 precursor miRNA


Sequence

gcuuuuuguucUAAGGUGCAUCUAGUGCAGAUAGugaaguagauuagcaucuACUGCCCUAAGUGCUCCUUCUGgcauaagaaguu
(((((((((.((((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).)))..))).))))))))).

Structure
-         u   --   U    C   U    A   -  aa u 
 gcuuuuugu cUA  AGG GCAU UAG GCAG UAG ug  g a
 ||||||||| |||  ||| |||| ||| |||| ||| ||  | g
 ugaagaaua gGU  UCC CGUG AUC CGUC Auc ac  u a
u         c   CU   U    A   C    -   u  ga u 


Annotation confidence Not enough data
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Genome context
AKHW03002195.1: 10810597-10810682 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ami-mir-18
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-18-5p

Accession MIMAT0038049
Description Alligator mississippiensis ami-miR-18-5p mature miRNA
Sequence 12 - UAAGGUGCAUCUAGUGCAGAUAG - 34
Evidence experimental
Illumina [1]

Mature ami-miR-18-3p

Accession MIMAT0038050
Description Alligator mississippiensis ami-miR-18-3p mature miRNA
Sequence 53 - ACUGCCCUAAGUGCUCCUUCUG - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196