miRBase entry: ami-mir-19a

Stem-loop ami-mir-19a

Accession

MI0029674

Description

Alligator mississippiensis ami-mir-19a precursor miRNA

Sequence

ugcagacuucuguuaguuuugcauaguugcacuacaagaagaauguaguUGUGCAAAUCUAUGCAAAACUGaugguggccugcu
.((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).)))).

Structure

u    a  u                 --      ---    ag 
 gcag cu cuguuaguuuugcauag  uugcac   uaca  a
 |||| || |||||||||||||||||  ||||||   ||||  a
 cguc gg gguaGUCAAAACGUAUC  AACGUG   augu  g
u    c  u                 UA      Uug    aa

Annotation confidence Not enough data

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Genome context

AKHW03002195.1: 10810463-10810546 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ami-mir-19a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-19a-5p

Accession	MIMAT0038051
Description	Alligator mississippiensis ami-miR-19a-5p mature miRNA
Sequence	50 - UGUGCAAAUCUAUGCAAAACUG - 71
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196