miRBase entry: ami-mir-19b

Stem-loop ami-mir-19b


Accession
MI0029675
Description
Alligator mississippiensis ami-mir-19b precursor miRNA


Sequence

cacuguucucugguuAGUUUUGCAGGUUUGCAUCCAGCuguaugauacucugcUGUGCAAAUCCAUGCAAAACUGacuguggcagug
(((((((...((((((((((((((((((((((..((((.............)))))))))).)).)))))))))))))).)))))))

Structure
       cuc              -  -      UC    uguau 
cacuguu   ugguuAGUUUUGCA GG UUUGCA  CAGC     g
|||||||   |||||||||||||| || ||||||  ||||     a
gugacgg   gucaGUCAAAACGU CC AAACGU  GUcg     u
       --u              A  U      --    ucuca 


Annotation confidence Not enough data
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Genome context
AKHW03002195.1: 10810105-10810191 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ami-mir-19b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-19b-5p

Accession MIMAT0038052
Description Alligator mississippiensis ami-miR-19b-5p mature miRNA
Sequence 16 - AGUUUUGCAGGUUUGCAUCCAGC - 38
Evidence experimental
Illumina [1]

Mature ami-miR-19b-3p

Accession MIMAT0038053
Description Alligator mississippiensis ami-miR-19b-3p mature miRNA
Sequence 54 - UGUGCAAAUCCAUGCAAAACUG - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196