miRBase entry: ami-mir-27b

Stem-loop ami-mir-27b


Accession
MI0029685
Description
Alligator mississippiensis ami-mir-27b precursor miRNA


Sequence

ccucucugacaaggugcAGAGCUUAGCUGAUUGGUGAACagugauugauuuccccuuugUUCACAGUGGCUAAGUUCUGcaccugaagagaaggug
(((((((....(((((((((((((((((.((((.(((((((...............))))))))))))))))))))))))))))..)))).)))..

Structure
--   -    gaca                 G    G       ugauug 
  ccu cucu    aggugcAGAGCUUAGCU AUUG UGAACag      a
  ||| ||||    ||||||||||||||||| |||| |||||||      u
  gga gaga    uccacGUCUUGAAUCGG UGAC ACUUguu      u
gu   a    --ag                 -    -       uccccu 


Annotation confidence Not enough data
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Genome context
AKHW03006358.1: 16892732-16892827 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ami-mir-27b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-27b-5p

Accession MIMAT0038069
Description Alligator mississippiensis ami-miR-27b-5p mature miRNA
Sequence 18 - AGAGCUUAGCUGAUUGGUGAAC - 39
Evidence experimental
Illumina [1]

Mature ami-miR-27b-3p

Accession MIMAT0038070
Description Alligator mississippiensis ami-miR-27b-3p mature miRNA
Sequence 60 - UUCACAGUGGCUAAGUUCUG - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196