miRBase entry: ami-mir-33-2

Stem-loop ami-mir-33-2


Accession
MI0029699
Description
Alligator mississippiensis ami-mir-33-2 precursor miRNA


Sequence

gcaguggccucagcugugGUGCAUUGUAGUUGCAUUGCAugugucacagaggugugCAAUGCCUCUGCAGUGCAGCccagaggaggcuccucccagca
((((.((((((..(((.((((((((((((..(((((((((((.((...)).)))))))))))..)))))))))).)))))..)))))).))....)).

Structure
-  ----  u      ag   u  -          UU           g  a 
 gc    ag ggccuc  cug gG UGCAUUGUAG  GCAUUGCAugu uc  
 ||    || ||||||  ||| || ||||||||||  ||||||||||| || c
 cg    uc ucggag  gac cC ACGUGACGUC  CGUAACgugug ag  
a  accc  c      ga   -  G          UC           g  a 


Annotation confidence Not enough data
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Genome context
AKHW03001118.1: 1812-1909 [-]

Database links

Mature ami-miR-33-5p

Accession MIMAT0038092
Description Alligator mississippiensis ami-miR-33-5p mature miRNA
Sequence 19 - GUGCAUUGUAGUUGCAUUGCA - 39
Evidence experimental
Illumina [1]

Mature ami-miR-33-2-3p

Accession MIMAT0038094
Description Alligator mississippiensis ami-miR-33-2-3p mature miRNA
Sequence 57 - CAAUGCCUCUGCAGUGCAGC - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196