Stem-loop ami-mir-34c

Accession

MI0029702

Description

Alligator mississippiensis ami-mir-34c precursor miRNA

Sequence

uaccucagccuaguugcuAGGCAGUGUAGUUAGCUGAUUGcaaaaggcaacAAUCACUAACCACACAGCCAGguaaaaaggucugucuugca
.....((((((..(((((.(((.((((.(((((.((((((..........))))))))))).)))).))).)))))..))).))).......

Structure

--uaccu   -   ag     A   A    A     C      caaa 
       cag ccu  uugcu GGC GUGU GUUAG UGAUUG    a
       ||| |||  ||||| ||| |||| ||||| ||||||     
       guc gga  aaugG CCG CACA CAAUC ACUAAc    g
acguucu   u   aa     A   A    C     -      aacg 

Annotation confidence Not enough data

Genome context

AKHW03003120.1: 1301761-1301852 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-34c

Mature ami-miR-34c-5p

• Accession: MIMAT0038099
• Description: Alligator mississippiensis ami-miR-34c-5p mature miRNA
• Sequence: 19 - AGGCAGUGUAGUUAGCUGAUUG - 40
• Evidence: experimental ; Illumina [1]

Mature ami-miR-34c-3p

• Accession: MIMAT0038100
• Description: Alligator mississippiensis ami-miR-34c-3p mature miRNA
• Sequence: 52 - AAUCACUAACCACACAGCCAG - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196