miRBase entry: ami-mir-93

Stem-loop ami-mir-93


Accession
MI0029705
Description
Alligator mississippiensis ami-mir-93 precursor miRNA


Sequence

cuugagcugcgguggcucCAAAGUGCUGUUCGUGCAGGUAGugugugcagccaucUACUGCCGGGCAGCACUUCCCgagcccccgcagccg
.....(((((((.(((((..((((((((((((.((((.(((.(((......))))))))))))))))))))))...))))).)))))))..

Structure
cuuga       u     -CA            U    G   u   ug 
     gcugcgg ggcuc   AAGUGCUGUUCG GCAG UAG gug  c
     ||||||| |||||   |||||||||||| |||| ||| |||   
     cgacgcc ccgag   UUCACGACGGGC CGUC AUc uac  a
---gc       c     CCC            -    -   -   cg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AKHW03000196.1: 16336-16426 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-93
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-93-5p

Accession MIMAT0038104
Description Alligator mississippiensis ami-miR-93-5p mature miRNA
Sequence 19 - CAAAGUGCUGUUCGUGCAGGUAG - 41
Evidence experimental
Illumina [1]

Mature ami-miR-93-3p

Accession MIMAT0038105
Description Alligator mississippiensis ami-miR-93-3p mature miRNA
Sequence 56 - UACUGCCGGGCAGCACUUCCC - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196