miRBase entry: ami-mir-98

Stem-loop ami-mir-98


Accession
MI0029707
Description
Alligator mississippiensis ami-mir-98 precursor miRNA


Sequence

gggUGAGGUAGUAAGUUGUAUCGUUggggggucgggauuggagccccggugucgagguaaCUAUACAACUUACUACUUUCCcu
(((.(((((((((((((((((.((((.....((((.(((((....))))).))))..)))).)))))))))))))))))))).

Structure
-   U                 C    ggggg    g     a 
 ggg GAGGUAGUAAGUUGUAU GUUg     ucgg auugg g
 ||| ||||||||||||||||| ||||     |||| |||||  
 cCC UUUCAUCAUUCAACAUA Caau     agcu uggcc c
u   -                 U    ---gg    g     c 


Annotation confidence Not enough data
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Genome context
AKHW03001570.1: 7585-7667 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-98
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-98-5p

Accession MIMAT0038108
Description Alligator mississippiensis ami-miR-98-5p mature miRNA
Sequence 4 - UGAGGUAGUAAGUUGUAUCGUU - 25
Evidence experimental
Illumina [1]

Mature ami-miR-98-3p

Accession MIMAT0038109
Description Alligator mississippiensis ami-miR-98-3p mature miRNA
Sequence 61 - CUAUACAACUUACUACUUUCC - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196