miRBase entry: ami-mir-122

Stem-loop ami-mir-122


Accession
MI0029716
Description
Alligator mississippiensis ami-mir-122 precursor miRNA


Sequence

uacuaucagagcugUGGAGUGUGACAAUGGUGUUUGuguccaaucuaucaAACGCCAUUAUCACACUAAAuagcuacuguuagaua
..(((.(((((((((..(((((((.(((((((((((............))))))))))).)))))))..)))))).))).)))...

Structure
-ua   u   -      GG       C           ugucc 
   cua cag agcugU  AGUGUGA AAUGGUGUUUG     a
   ||| ||| ||||||  ||||||| |||||||||||      
   gau guc ucgauA  UCACACU UUACCGCAAac     a
aua   u   a      AA       A           uaucu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AKHW03004724.1: 15598707-15598792 [+]

Database links

Mature ami-miR-122-5p

Accession MIMAT0038123
Description Alligator mississippiensis ami-miR-122-5p mature miRNA
Sequence 15 - UGGAGUGUGACAAUGGUGUUUG - 36
Evidence experimental
Illumina [1]

Mature ami-miR-122-3p

Accession MIMAT0038124
Description Alligator mississippiensis ami-miR-122-3p mature miRNA
Sequence 51 - AACGCCAUUAUCACACUAAA - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196