miRBase entry: ami-mir-125a

Stem-loop ami-mir-125a


Accession
MI0029721
Description
Alligator mississippiensis ami-mir-125a precursor miRNA


Sequence

cuaggccucccucucggUCCCUGAGACCCUUAUCCUGUGagggagcccagagcucacaggugaggccuugggaacugggcggguggcccccccac
...((((.(((.((((((.((((((..(((((.((((((((...........))))))))))))).)))))).)))))).))).)))).......

Structure
----cua    u   u      C      AC     U        ggag 
       ggcc ccc cucggU CCUGAG  CCUUA CCUGUGag    c
       |||| ||| |||||| ||||||  ||||| ||||||||    c
       ccgg ggg ggguca ggguuc  ggagu ggacacuc    c
caccccc    u   c      a      -c     -        gaga 


Annotation confidence Not enough data
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Genome context
AKHW03006683.1: 234116-234210 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ami-mir-125a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-125a-5p

Accession MIMAT0038127
Description Alligator mississippiensis ami-miR-125a-5p mature miRNA
Sequence 18 - UCCCUGAGACCCUUAUCCUGUG - 39
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196