miRBase entry: ami-mir-138-1

Stem-loop ami-mir-138-1


Accession
MI0029742
Description
Alligator mississippiensis ami-mir-138-1 precursor miRNA


Sequence

ucuggaugguacagugcugcAGCUGGUGUUGUGAAUCAGGCcgucaccgaucagagaacgGCUACUUCACAACACCAGGGUugcacccuaccacagucaa
.(((..(((((..((((.((..(((((((((((((...((((((...(.....)...))))))..))))))))))))).)).))))..))))))))....

Structure
---u   ga     ca    u  AG             UCA      cac g 
    cug  uggua  gugc gc  CUGGUGUUGUGAA   GGCcgu   c a
    |||  |||||  |||| ||  |||||||||||||   ||||||   | u
    gac  accau  cacg UG  GACCACAACACUU   UCGgca   g c
aacu   --     cc    u  -G             -CA      aga a 


Annotation confidence Not enough data
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Genome context
AKHW03005461.1: 38580976-38581075 [-]

Database links

Mature ami-miR-138-5p

Accession MIMAT0038155
Description Alligator mississippiensis ami-miR-138-5p mature miRNA
Sequence 21 - AGCUGGUGUUGUGAAUCAGGC - 41
Evidence experimental
Illumina [1]

Mature ami-miR-138-3p

Accession MIMAT0038156
Description Alligator mississippiensis ami-miR-138-3p mature miRNA
Sequence 61 - GCUACUUCACAACACCAGGGU - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196