miRBase entry: ami-mir-196-2

Stem-loop ami-mir-196-2


Accession
MI0029780
Description
Alligator mississippiensis ami-mir-196-2 precursor miRNA


Sequence

gugcagcugaucugugguuUAGGUAGUUUCAUGUUGUUGGgauuggcuuuuagcucggcaacaagaaacugccuuaauuacgucaguuaguguuc
..(((((((((..((((((.((((((((((.((((((((((.(((.....))))))))))))).)))))))))).))))))))))))).))....

Structure
--gu  -       cu      U          A          a   g 
    gc agcugau  gugguu AGGUAGUUUC UGUUGUUGGg uug c
    || |||||||  |||||| |||||||||| |||||||||| ||| u
    ug uugacug  cauuaa uccgucaaag acaacggcuc gau u
cuug  a       --      u          a          -   u 


Annotation confidence Not enough data
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Genome context
AKHW03000840.1: 280047-280141 [+]

Database links

Mature ami-miR-196-5p

Accession MIMAT0038215
Description Alligator mississippiensis ami-miR-196-5p mature miRNA
Sequence 20 - UAGGUAGUUUCAUGUUGUUGG - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196