miRBase entry: ami-mir-199-2

Stem-loop ami-mir-199-2


Accession
MI0029783
Description
Alligator mississippiensis ami-mir-199-2 precursor miRNA


Sequence

ccugcuccgucgcCCCAGUGUUCAGACUACCUGUUcaggacaaugcuguuguACAGUAGUCUGCACAUUGGUUAgacugggcaagggaa
(((((((.(((...(((((((.((((((((.(((....((((....))))..))))))))))).)))))))...))).)))).)))...

Structure
---   -    c   gcC       U        C   Ucag    a 
   ccu gcuc guc   CCAGUGU CAGACUAC UGU    gaca u
   ||| |||| |||   ||||||| |||||||| |||    ||||  
   gga cggg cag   GGUUACA GUCUGAUG ACA    uugu g
aag   a    u   AUU       C        -   --ug    c 


Annotation confidence Not enough data
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Genome context
AKHW03002184.1: 581623-581711 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-199-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-199-5p

Accession MIMAT0038216
Description Alligator mississippiensis ami-miR-199-5p mature miRNA
Sequence 14 - CCCAGUGUUCAGACUACCUGUU - 35
Evidence experimental
Illumina [1]

Mature ami-miR-199-3p

Accession MIMAT0038217
Description Alligator mississippiensis ami-miR-199-3p mature miRNA
Sequence 53 - ACAGUAGUCUGCACAUUGGUUA - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196