miRBase entry: ami-mir-200b

Stem-loop ami-mir-200b

Accession

MI0029786

Description

Alligator mississippiensis ami-mir-200b precursor miRNA

Sequence

uccugggaugccguuacCAUCUUACUGGGCAGCAUUGGauguuuucuguguuucUAAUACUGCCUGGUAAUGAUGAUuauggugucucgc
...(((((((((((...(((((((((((((((.((((((.............)))))).))))))))))).))))...))))))))))).

Structure

ucc           uac    -           C      uguuu 
   ugggaugccgu   CAUC UUACUGGGCAG AUUGGa     u
   |||||||||||   |||| ||||||||||| ||||||     c
   gcucuguggua   GUAG AAUGGUCCGUC UAAUcu     u
--c           uUA    U           A      uugug

Annotation confidence Not enough data

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Genome context

AKHW03004073.1: 9496695-9496784 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ami-mir-200b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-200b-5p

Accession	MIMAT0038220
Description	Alligator mississippiensis ami-miR-200b-5p mature miRNA
Sequence	18 - CAUCUUACUGGGCAGCAUUGG - 38
Evidence	experimental Illumina [1]

Mature ami-miR-200b-3p

Accession	MIMAT0038221
Description	Alligator mississippiensis ami-miR-200b-3p mature miRNA
Sequence	55 - UAAUACUGCCUGGUAAUGAUGAU - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196