miRBase entry: ami-mir-206

Stem-loop ami-mir-206


Accession
MI0029793
Description
Alligator mississippiensis ami-mir-206 precursor miRNA


Sequence

cuucucuuuugaggcaACAUGCUUCUUUAUAUCCCCAUagggauaacagugcuaUGGAAUGUAAGGAAGUGUGUGGuuucggggagaug
..(((((((.(((((.((((((((((((((((..((((((.(.......).)))))).)))))))))))))))).))))))))))))..

Structure
cu       u     a                CC      g au 
  ucucuuu gaggc ACAUGCUUCUUUAUAU  CCAUag g  a
  ||||||| ||||| ||||||||||||||||  |||||| |  a
  agagggg cuuuG UGUGUGAAGGAAUGUA  GGUauc u  c
gu       -     G                -A      g ga 


Annotation confidence Not enough data
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Genome context
AKHW03003504.1: 2014183-2014271 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-206
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-206-5p

Accession MIMAT0038231
Description Alligator mississippiensis ami-miR-206-5p mature miRNA
Sequence 17 - ACAUGCUUCUUUAUAUCCCCAU - 38
Evidence experimental
Illumina [1]

Mature ami-miR-206-3p

Accession MIMAT0038232
Description Alligator mississippiensis ami-miR-206-3p mature miRNA
Sequence 55 - UGGAAUGUAAGGAAGUGUGUGG - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196