Stem-loop ami-mir-216b

Accession

MI0029800

Description

Alligator mississippiensis ami-mir-216b precursor miRNA

Sequence

caagucgcagacugggAAAUCUCUACAGGCAAAUGUGAugucuuuauaguaaucUCACAAUUACCUAUAGAGAUUCuucaaucuggcaucuuc
.(((..(((((.((((.((((((((.(((.((.(((((...((....)).....))))).)).))).)))))))).)))).))).))..))).

Structure

c   uc  -   c    A        C   C  A     --ugu  u 
 aag  gc aga uggg AAUCUCUA AGG AA UGUGA     cu u
 |||  || ||| |||| |||||||| ||| || |||||     ||  
 uuc  cg ucu acuu UUAGAGAU UCC UU ACACU     ga a
c   ua  g   a    C        A   A  A     cuaau  u 

Annotation confidence Not enough data

Genome context

AKHW03006178.1: 3406259-3406351 [-]

Mature ami-miR-216b-5p

• Accession: MIMAT0038243
• Description: Alligator mississippiensis ami-miR-216b-5p mature miRNA
• Sequence: 17 - AAAUCUCUACAGGCAAAUGUGA - 38
• Evidence: experimental ; Illumina [1]

Mature ami-miR-216b-3p

• Accession: MIMAT0038244
• Description: Alligator mississippiensis ami-miR-216b-3p mature miRNA
• Sequence: 55 - UCACAAUUACCUAUAGAGAUUC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196