miRBase entry: ami-mir-223

Stem-loop ami-mir-223


Accession
MI0029809
Description
Alligator mississippiensis ami-mir-223 precursor miRNA


Sequence

cgcagugcugcacucCGUGUAUUUGACAAGCUGAGUUUgacacucaguguggcagagUGUCAGUUUGUCAAAUACCCCAAgugaggc
......(((.((((..(.((((((((((((((((.((((.(((.....))).))))...)))))))))))))))).)..)))).)))

Structure
cgcagu   g    cC U                --G    a   u 
      gcu cacu  G GUAUUUGACAAGCUGA   UUUg cac c
      ||| ||||  | ||||||||||||||||   |||| ||| a
      cgg gugA  C CAUAAACUGUUUGACU   agac gug g
------   a    AC C                GUg    g   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AKHW03002524.1: 10857685-10857771 [+]

Database links

Mature ami-miR-223-5p

Accession MIMAT0038258
Description Alligator mississippiensis ami-miR-223-5p mature miRNA
Sequence 16 - CGUGUAUUUGACAAGCUGAGUUU - 38
Evidence experimental
Illumina [1]

Mature ami-miR-223-3p

Accession MIMAT0038259
Description Alligator mississippiensis ami-miR-223-3p mature miRNA
Sequence 58 - UGUCAGUUUGUCAAAUACCCCAA - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196