Stem-loop ami-mir-301a

Accession

MI0029810

Description

Alligator mississippiensis ami-mir-301a precursor miRNA

Sequence

cugcuaacgaauGCUCUGACUUUAUUGCACUACUguacuuuacagcuagCAGUGCAAUAGUAUUGUCAAAGCAUcugaaagcagag
(((((..((.(((((.((((.((((((((((.((((........)).)).))))))))))....)))).))))).))..)))))..

Structure

--     aa  a     C    ---U          A  -  acu 
  cugcu  cg auGCU UGAC    UUAUUGCACU CU gu   u
  |||||  || ||||| ||||    |||||||||| || ||    
  gacga  gu UACGA ACUG    GAUAACGUGA ga cg   u
ga     aa  c     A    UUAU          C  u  aca 

Annotation confidence Not enough data

Genome context

AKHW03004004.1: 14073244-14073329 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-301a

Mature ami-miR-301a-5p

• Accession: MIMAT0038260
• Description: Alligator mississippiensis ami-miR-301a-5p mature miRNA
• Sequence: 13 - GCUCUGACUUUAUUGCACUACU - 34
• Evidence: experimental ; Illumina [1]

Mature ami-miR-301a-3p

• Accession: MIMAT0038261
• Description: Alligator mississippiensis ami-miR-301a-3p mature miRNA
• Sequence: 50 - CAGUGCAAUAGUAUUGUCAAAGCAU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196