miRBase entry: ami-mir-301b

Stem-loop ami-mir-301b

Accession

MI0029811

Description

Alligator mississippiensis ami-mir-301b precursor miRNA

Sequence

guggcugcugguaucgcuggcUCUGACAAUGUUGCACUACUgucugcacaaauaaagCAGUGCAAUAAUAUUGUCAAAGCauuugguuccaguccua
..((..(((((.((((...(((.(((((((((((((((.((..............)).))))))...))))))))).)))...)))).)))))))..

Structure

gu  cu     u    cug   C         ---      A  gucugc 
  gg  gcugg aucg   gcU UGACAAUGU   UGCACU CU      a
  ||  ||||| ||||   ||| |||||||||   |||||| ||       
  cc  ugacc uggu   CGA ACUGUUAUA   ACGUGA ga      c
au  --     u    uua   A         AUA      C  aauaaa

Annotation confidence Not enough data

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Genome context

AKHW03002185.1: 24520-24616 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ami-mir-301b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-301b-5p

Accession	MIMAT0038262
Description	Alligator mississippiensis ami-miR-301b-5p mature miRNA
Sequence	22 - UCUGACAAUGUUGCACUACU - 41
Evidence	experimental Illumina [1]

Mature ami-miR-301b-3p

Accession	MIMAT0038263
Description	Alligator mississippiensis ami-miR-301b-3p mature miRNA
Sequence	58 - CAGUGCAAUAAUAUUGUCAAAGC - 80
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196