miRBase entry: ami-mir-302a

Stem-loop ami-mir-302a


Accession
MI0029812
Description
Alligator mississippiensis ami-mir-302a precursor miRNA


Sequence

agcuuaaaggacccccagaacuuuaauguggauguacuugcuuuguuucugaaaaagUAAGUGCUUCCAUGUUUUGGUGcuggugaauccugcucu
(((....((((..(((((.(((..((((((((.(((((((((((.........))))))))))).))))))))..))).)))).)..)))))))..

Structure
--   uuaa    cc -    a   uu        u           guu 
  agc    agga  c ccag acu  aaugugga guacuugcuuu   u
  |||    ||||  | |||| |||  |||||||| |||||||||||   c
  ucg    uccu  g gguc UGG  UUGUACCU CGUGAAUgaaa   u
uc   ----    aa u    G   UU        U           aag 


Annotation confidence Not enough data
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Genome context
AKHW03006071.1: 214064-214159 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from ami-mir-302a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-302a-3p

Accession MIMAT0038264
Description Alligator mississippiensis ami-miR-302a-3p mature miRNA
Sequence 58 - UAAGUGCUUCCAUGUUUUGGUG - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196