Stem-loop ami-mir-429

Accession

MI0029824

Description

Alligator mississippiensis ami-mir-429 precursor miRNA

Sequence

ccugagugccugcugauugacgUCUUACCAGACAAAGUUAGAucuagcuauuuucgucUAAUACUGUCUGGUAAUGCCguugaucgcacuggca
......(((((((.((((((((.(((((((((((..(((((((............)))))))..)))))))))).).)))))))))))..))))

Structure

ccugag    --   u        U -          AA       cuagc 
      ugcc  ugc gauugacg C UUACCAGACA  GUUAGAu     u
      ||||  ||| |||||||| | ||||||||||  |||||||      
      acgg  acg cuaguugC G AAUGGUCUGU  UAAUcug     a
------    uc   -        C U          CA       cuuuu 

Annotation confidence Not enough data

Genome context

AKHW03004073.1: 9503570-9503663 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ami-mir-429

Mature ami-miR-429-5p

• Accession: MIMAT0038279
• Description: Alligator mississippiensis ami-miR-429-5p mature miRNA
• Sequence: 23 - UCUUACCAGACAAAGUUAGA - 42
• Evidence: experimental ; Illumina [1]

Mature ami-miR-429-3p

• Accession: MIMAT0038280
• Description: Alligator mississippiensis ami-miR-429-3p mature miRNA
• Sequence: 59 - UAAUACUGUCUGGUAAUGCC - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196