miRBase entry: ami-mir-449c

Stem-loop ami-mir-449c


Accession
MI0029827
Description
Alligator mississippiensis ami-mir-449c precursor miRNA


Sequence

auguuucaguUUGGCAGUGCAUUGCUAGCUGGCuguuguguacguguguuaacaguugcuagcuguacuccauauuguugcauuc
((((..((((.(((.((((((..((((((.((((((((...........))))))))))))))))))))))).))))..))))..

Structure
--    uu    U   C      UU      U        ugua 
  augu  cagu UGG AGUGCA  GCUAGC GGCuguug    c
  ||||  |||| ||| ||||||  |||||| ||||||||    g
  uacg  guua acc ucaugu  cgaucg uugacaau    u
cu    uu    u   -      --      -        ugug 


Annotation confidence Not enough data
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Genome context
AKHW03004724.1: 29165962-29166046 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from ami-mir-449c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-449c-5p

Accession MIMAT0038283
Description Alligator mississippiensis ami-miR-449c-5p mature miRNA
Sequence 11 - UUGGCAGUGCAUUGCUAGCUGGC - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196