miRBase entry: ami-mir-449d

Stem-loop ami-mir-449d


Accession
MI0029828
Description
Alligator mississippiensis ami-mir-449d precursor miRNA


Sequence

augugugugugaugauuAGGCAGUGUAUUGUUAGUUAGCuggcauucacauaccagcaacuaaacacacuuccacauuagcacacaac
.(((((((.(((((....((.(((((....((((((.(((((..........)))))))))))..))))).)).))))))))))))..

Structure
-a       g     auuA  C     AUUG      A     cauu 
  ugugugu ugaug    GG AGUGU    UUAGUU GCugg    c
  ||||||| |||||    || |||||    |||||| |||||     
  acacacg auuac    cc ucaca    aaucaa cgacc    a
ca       -     ---a  u     --ca      -     auac 


Annotation confidence Not enough data
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Genome context
AKHW03004724.1: 29164098-29164185 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from ami-mir-449d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-449d-5p

Accession MIMAT0038284
Description Alligator mississippiensis ami-miR-449d-5p mature miRNA
Sequence 18 - AGGCAGUGUAUUGUUAGUUAGC - 39
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196