miRBase entry: ami-mir-875

Stem-loop ami-mir-875

Accession

MI0029844

Description

Alligator mississippiensis ami-mir-875 precursor miRNA

Sequence

guuuagugguacAAUACCUCAGUCUUUUCAGGUGuucuauaaaaucaccuggaaauauugagguugaguuucacugaacacaggc
(((((((((.((...((((((((.((((((((((...........)))))))))).))))))))...)).)))))))))......

Structure

------         u  AAU        C          uucu 
      guuuagugg ac   ACCUCAGU UUUUCAGGUG    a
      ||||||||| ||   |||||||| ||||||||||    u
      caagucacu ug   uggaguua aaagguccac    a
cggaca         u  agu        u          uaaa

Annotation confidence Not enough data

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Genome context

AKHW03004704.1: 18806599-18806683 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-875

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-875-5p

Accession	MIMAT0038308
Description	Alligator mississippiensis ami-miR-875-5p mature miRNA
Sequence	13 - AAUACCUCAGUCUUUUCAGGUG - 34
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196