miRBase entry: ami-mir-1397

Stem-loop ami-mir-1397


Accession
MI0029848
Description
Alligator mississippiensis ami-mir-1397 precursor miRNA


Sequence

acagagugcgaugugugcauUGCAUUGCGACGGGUUACAUCacuggucguaacaugAUGUAACCCAACGCAGCAUGAUguaagcgucgugauacauugg
.(((.(((((((((.((((((...(((((..(((((((((((.((.......)))))))))))))..)))))...)))))).)))))))...)).))).

Structure
a   a  ---       g      GCA     AC           c  gu 
 cag gu   gcgaugu ugcauU   UUGCG  GGGUUACAUCa ug  c
 ||| ||   ||||||| ||||||   |||||  ||||||||||| ||  g
 guu ca   ugcugcg augUAG   GACGC  CCCAAUGUAgu ac  u
g   a  uag       a      UAC     AA           -  aa 


Annotation confidence Not enough data
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Genome context
AKHW03001669.1: 1016066-1016164 [+]

Database links

Mature ami-miR-1397-5p

Accession MIMAT0038314
Description Alligator mississippiensis ami-miR-1397-5p mature miRNA
Sequence 21 - UGCAUUGCGACGGGUUACAUC - 41
Evidence experimental
Illumina [1]

Mature ami-miR-1397-3p

Accession MIMAT0038315
Description Alligator mississippiensis ami-miR-1397-3p mature miRNA
Sequence 57 - AUGUAACCCAACGCAGCAUGAU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196