miRBase entry: ami-mir-1677b

Stem-loop ami-mir-1677b


Accession
MI0029853
Description
Alligator mississippiensis ami-mir-1677b precursor miRNA


Sequence

agcaacuaggggccugaUCCAGAGCCCGUUGAAGUCAGcgggagacauucaagUGACUUCAGGGGGCUUUGAAUGaggcucucagugaucacacu
....(((.(((((((.((.((((((((.(((((((((...(((....)))...))))))))).)))))))).)).))))))).))).........

Structure
-----agca   a       g  C        G         Gcg   g 
         acu ggggccu aU CAGAGCCC UUGAAGUCA   gga a
         ||| ||||||| || |||||||| |||||||||   |||  
         uga ucucgga UA GUUUCGGG GACUUCAGU   cuu c
ucacacuag   c       G  A        G         gaa   a 


Annotation confidence Not enough data
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Genome context
AKHW03006295.1: 4406452-4406546 [-]

Database links

Mature ami-miR-1677b-5p

Accession MIMAT0038320
Description Alligator mississippiensis ami-miR-1677b-5p mature miRNA
Sequence 18 - UCCAGAGCCCGUUGAAGUCAG - 38
Evidence experimental
Illumina [1]

Mature ami-miR-1677b-3p

Accession MIMAT0038321
Description Alligator mississippiensis ami-miR-1677b-3p mature miRNA
Sequence 54 - UGACUUCAGGGGGCUUUGAAUG - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196