miRBase entry: ami-mir-2970

Stem-loop ami-mir-2970


Accession
MI0029861
Description
Alligator mississippiensis ami-mir-2970 precursor miRNA


Sequence

cgggccucuuccugccacugcaGACAGUCAGCAGUUGGUCUGgcgugagcagcauucucAGAUCACCUCUUGGCUGUGGGuggugcagagagcgccgc
..(((((((..((((.(((((..((((((((.((.((((((((.(((.....)))..)))))))).)).))))))))..))))))))))))).)))..

Structure
cg   -    uc    c     aG        C  U        -c   a 
  ggc cucu  cugc acugc  ACAGUCAG AG UGGUCUGg  gug g
  ||| ||||  |||| |||||  |||||||| || ||||||||  ||| c
  ccg gaga  gacg ugguG  UGUCGGUU UC ACUAGAcu  uac a
cg   c    --    -     GG        C  C        cu   g 


Annotation confidence Not enough data
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Genome context
AKHW03003150.1: 64489-64586 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ami-mir-2970
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-2970-5p

Accession MIMAT0038335
Description Alligator mississippiensis ami-miR-2970-5p mature miRNA
Sequence 23 - GACAGUCAGCAGUUGGUCUG - 42
Evidence experimental
Illumina [1]

Mature ami-miR-2970-3p

Accession MIMAT0038336
Description Alligator mississippiensis ami-miR-2970-3p mature miRNA
Sequence 60 - AGAUCACCUCUUGGCUGUGGG - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196