miRBase entry: cli-let-7a-1

Stem-loop cli-let-7a-1

Accession

MI0029882

Description

Columba livia cli-let-7a-1 precursor miRNA

Sequence

cugugcugugggaUGAGGUAGUAGGUUGUAUAGUUuuagggucauacccgcaacugggagauaaCUAUACAAUCUACUGUCUUUCcuaaag
.....((.(((((.(((((((((((((((((((((.....(((...(((......))).))))))))))))))))))))))))))))).))

Structure

cugug  g     U                     uuagg   aua   gc 
     cu uggga GAGGUAGUAGGUUGUAUAGUU     guc   ccc  a
     || ||||| |||||||||||||||||||||     |||   |||   
     ga aucCU UUCUGUCAUCUAACAUAUCaa     uag   ggg  a
-----  a     -                     -----   --a   uc

Annotation confidence Not enough data

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Genome context

KB375849.1: 22163-22253 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cli-let-7a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-let-7a-5p

Accession	MIMAT0038374
Description	Columba livia cli-let-7a-5p mature miRNA
Sequence	14 - UGAGGUAGUAGGUUGUAUAGUU - 35
Evidence	experimental Illumina [1]

Mature cli-let-7a-3p

Accession	MIMAT0038375
Description	Columba livia cli-let-7a-3p mature miRNA
Sequence	65 - CUAUACAAUCUACUGUCUUUC - 85
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196