miRBase entry: cli-let-7c

Stem-loop cli-let-7c


Accession
MI0029887
Description
Columba livia cli-let-7c precursor miRNA


Sequence

gcauccggguUGAGGUAGUAGGUUGUAUGGUUuagaguuacacccugggaguuaaCUGUACAACCUUCUAGCUUUCCuuggagca
((.((((((..(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).)))..)))))))).

Structure
-  a      uU   G   U             ua  g ua  c 
 gc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  ca  
 || ||||||  ||| ||| |||||||||||||  || |  || c
 cg agguuC  UUC AUC UCCAACAUGUCaa  uu a  gu  
a  -      CU   G   U             --  g gg  c 


Annotation confidence Not enough data
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Genome context
KB375804.1: 18430659-18430743 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-let-7c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-let-7c-5p

Accession MIMAT0038379
Description Columba livia cli-let-7c-5p mature miRNA
Sequence 11 - UGAGGUAGUAGGUUGUAUGGUU - 32
Evidence experimental
Illumina [1]

Mature cli-let-7c-3p

Accession MIMAT0038380
Description Columba livia cli-let-7c-3p mature miRNA
Sequence 56 - CUGUACAACCUUCUAGCUUUCC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196