miRBase entry: cli-let-7e

Stem-loop cli-let-7e

Accession

MI0029889

Description

Columba livia cli-let-7e precursor miRNA

Sequence

cuguccuugaggcUGAGGUAGUAGAUUGAAUAGUUguggaguccgauccucccuuugagcaaaCUAUACAAUCUACUGUCUUUCCuaaggaga
...(((((.(((..((((((((((((((.((((((((((((.......))))......)).)))))).)))))))))))))).))))))))..

Structure

cug     g   cU              A      -  ------    uc 
   uccuu agg  GAGGUAGUAGAUUG AUAGUU gu      ggag  c
   ||||| |||  |||||||||||||| |||||| ||      ||||  g
   aggaa uCC  UUCUGUCAUCUAAC UAUCaa cg      ccuc  a
-ag     -   -U              A      a  aguuuc    cu

Annotation confidence Not enough data

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Genome context

KB375734.1: 1198016-1198108 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-let-7e

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-let-7e-5p

Accession	MIMAT0038383
Description	Columba livia cli-let-7e-5p mature miRNA
Sequence	14 - UGAGGUAGUAGAUUGAAUAGUU - 35
Evidence	experimental Illumina [1]

Mature cli-let-7e-3p

Accession	MIMAT0038384
Description	Columba livia cli-let-7e-3p mature miRNA
Sequence	64 - CUAUACAAUCUACUGUCUUUCC - 85
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196