miRBase entry: cli-mir-16a-1

Stem-loop cli-mir-16a-1

Accession

MI0029909

Description

Columba livia cli-mir-16a-1 precursor miRNA

Sequence

ucugucauacuuUAGCAGCACGUAAAUAUUGGUGUuaagacuguaaauaucUCCAGUAUUAACUGUGCUGCUGAAguaaggcuag
...(((.((((((((((((((((.((((((((.(................).)))))))).)).)))))))))))))).)))...

Structure

ucu   a              -  A        U Uuaagac 
   guc uacuuUAGCAGCAC GU AAUAUUGG G       u
   ||| |||||||||||||| || |||||||| |        
   cgg augAAGUCGUCGUG CA UUAUGACC c       g
gau   a              U  A        U uauaaau

Annotation confidence Not enough data

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Genome context

KB375372.1: 15185451-15185535 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-16a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-16a-5p

Accession	MIMAT0038416
Description	Columba livia cli-miR-16a-5p mature miRNA
Sequence	13 - UAGCAGCACGUAAAUAUUGGUGU - 35
Evidence	experimental Illumina [1]

Mature cli-miR-16a-3p

Accession	MIMAT0038417
Description	Columba livia cli-miR-16a-3p mature miRNA
Sequence	52 - UCCAGUAUUAACUGUGCUGCUGAA - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196