miRBase entry: cli-mir-18b

Stem-loop cli-mir-18b


Accession
MI0029914
Description
Columba livia cli-mir-18b precursor miRNA


Sequence

guucuuguguUAAGGUGCAUCUAGUGCAGUuagugaaguagcguagaaucuacUGCCCUAAAUGCUCCUUCUGGCacaagcug
...((((((((((((.((((.(((.(((((.((................))))))).))).)))).)))..)))))))))...

Structure
guu         --   U    C   U     u  ugaagua 
   cuuguguUA  AGG GCAU UAG GCAGU ag       g
   |||||||||  ||| |||| ||| ||||| ||        
   gaacaCGGU  UCC CGUA AUC CGUca uc       c
guc         CU   U    A   C     -  uaagaug 


Annotation confidence Not enough data
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Genome context
KB375349.1: 3452301-3452383 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cli-mir-18b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-18b-5p

Accession MIMAT0038425
Description Columba livia cli-miR-18b-5p mature miRNA
Sequence 11 - UAAGGUGCAUCUAGUGCAGU - 30
Evidence experimental
Illumina [1]

Mature cli-miR-18b-3p

Accession MIMAT0038426
Description Columba livia cli-miR-18b-3p mature miRNA
Sequence 54 - UGCCCUAAAUGCUCCUUCUGGC - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196