miRBase entry: cli-mir-27b

Stem-loop cli-mir-27b

Accession

MI0029925

Description

Columba livia cli-mir-27b precursor miRNA

Sequence

gcgaggugcAGAGCUUAGCUGAUUGGUGAACAgugauuguuucccucuuugUUCACAGUGGCUAAGUUCUGCaccugaggag
...(((((((((((((((((.((((.(((((((.((.........)).))))))))))))))))))))))))))))......

Structure

---gcg                 G    G       u  uug 
      aggugcAGAGCUUAGCU AUUG UGAACAg ga   u
      ||||||||||||||||| |||| ||||||| ||   u
      uccaCGUCUUGAAUCGG UGAC ACUUguu cu   u
gaggag                 -    -       u  ccc

Annotation confidence Not enough data

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Genome context

KB375520.1: 156995-157076 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-27b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-27b-5p

Accession	MIMAT0038445
Description	Columba livia cli-miR-27b-5p mature miRNA
Sequence	10 - AGAGCUUAGCUGAUUGGUGAACA - 32
Evidence	experimental Illumina [1]

Mature cli-miR-27b-3p

Accession	MIMAT0038446
Description	Columba livia cli-miR-27b-3p mature miRNA
Sequence	52 - UUCACAGUGGCUAAGUUCUGC - 72
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196