miRBase entry: cli-mir-29a-1

Stem-loop cli-mir-29a-1

Accession

MI0029926

Description

Columba livia cli-mir-29a-1 precursor miRNA

Sequence

aggaugACUGAUUUCUUUUGGUGUUCAGAgucaauaauauuuucUAGCACCAUUUGAAAUCGGUUAuagu
...((((((((((((...(((((((.((((...........)))))))))))...))))))))))))...

Structure

agg            UUU       C    ucaa 
   augACUGAUUUC   UGGUGUU AGAg    u
   ||||||||||||   ||||||| ||||    a
   uAUUGGCUAAAG   ACCACGA Ucuu    a
uga            UUU       -    uuau

Annotation confidence Not enough data

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Genome context

KB375423.1: 48226-48295 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-29a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-29a-5p

Accession	MIMAT0038447
Description	Columba livia cli-miR-29a-5p mature miRNA
Sequence	7 - ACUGAUUUCUUUUGGUGUUCAGA - 29
Evidence	experimental Illumina [1]

Mature cli-miR-29a-3p

Accession	MIMAT0038448
Description	Columba livia cli-miR-29a-3p mature miRNA
Sequence	45 - UAGCACCAUUUGAAAUCGGUUA - 66
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196