miRBase entry: cli-mir-92-1

Stem-loop cli-mir-92-1

Accession

MI0029942

Description

Columba livia cli-mir-92-1 precursor miRNA

Sequence

ccuuucuacacAGGUUGGGAUCAGUUGCAAUGCUgugugugucucuggUAUUGCACUUGUCCCGGCCUGUugagguuggugg
((..(((..((((((((((((.(((.((((((((............))))))))))).))))))))))))..)))..))...

Structure

---  uu   ac            C   U        gugug 
   cc  ucu  acAGGUUGGGAU AGU GCAAUGCU     u
   ||  |||  |||||||||||| ||| ||||||||      
   gg  gga  UGUCCGGCCCUG UCA CGUUAUgg     g
ggu  uu   gu            U   -        ucucu

Annotation confidence Not enough data

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Genome context

KB375488.1: 2837243-2837324 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cli-mir-92-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-92-5p

Accession	MIMAT0038473
Description	Columba livia cli-miR-92-5p mature miRNA
Sequence	12 - AGGUUGGGAUCAGUUGCAAUGCU - 34
Evidence	experimental Illumina [1]

Mature cli-miR-92-3p

Accession	MIMAT0038474
Description	Columba livia cli-miR-92-3p mature miRNA
Sequence	49 - UAUUGCACUUGUCCCGGCCUGU - 70
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196