miRBase entry: cli-mir-99

Stem-loop cli-mir-99


Accession
MI0029945
Description
Columba livia cli-mir-99 precursor miRNA


Sequence

gaugccaauuggcauaAACCCGUAGAUCCGAUCUUGUGuugaaacgcacugcaCAAGCUCGCUUCUAUGGGUCUGugucaguauggugauc
((((((((((((((((.(((((((((..(((.(((((((...........))))))).)))..))))))))).))))))))).)))).)))

Structure
   -    -         A         UC   U       ugaa 
gau gcca auuggcaua ACCCGUAGA  CGA CUUGUGu    a
||| |||| ||||||||| |||||||||  ||| |||||||    c
cua uggu ugacuguGU UGGGUAUCU  GCU GAACacg    g
   g    a         C         UC   C       ucac 


Annotation confidence Not enough data
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Genome context
KB375804.1: 18429898-18429988 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-99
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-99-5p

Accession MIMAT0038478
Description Columba livia cli-miR-99-5p mature miRNA
Sequence 17 - AACCCGUAGAUCCGAUCUUGUG - 38
Evidence experimental
Illumina [1]

Mature cli-miR-99-3p

Accession MIMAT0038479
Description Columba livia cli-miR-99-3p mature miRNA
Sequence 54 - CAAGCUCGCUUCUAUGGGUCUG - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196