miRBase entry: cli-mir-130c

Stem-loop cli-mir-130c


Accession
MI0029963
Description
Columba livia cli-mir-130c precursor miRNA


Sequence

gugcuguuguccagaGCCCUUUUUCUGUUGUACUACUggcaauuaugaugagCAGUGCAAUAUUAAAAGGGCAUuggcuggcagaaa
...((((((.((((.((((((((..(((((((((.((.(((....)).).)).)))))))))..)))))))).)))).))))))...

Structure
gug      u    a        UC         A  g -  a 
   cuguug ccag GCCCUUUU  UGUUGUACU CU g ca u
   |||||| |||| ||||||||  ||||||||| || | ||  
   gacggu gguU CGGGAAAA  AUAACGUGA ga u gu u
aaa      c    A        UU         C  g a  a 


Annotation confidence Not enough data
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Genome context
KB376592.1: 505475-505561 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cli-mir-130c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-130c-5p

Accession MIMAT0038507
Description Columba livia cli-miR-130c-5p mature miRNA
Sequence 16 - GCCCUUUUUCUGUUGUACUACU - 37
Evidence experimental
Illumina [1]

Mature cli-miR-130c-3p

Accession MIMAT0038508
Description Columba livia cli-miR-130c-3p mature miRNA
Sequence 53 - CAGUGCAAUAUUAAAAGGGCAU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196