miRBase entry: cli-mir-181a-2

Stem-loop cli-mir-181a-2

Accession

MI0029990

Description

Columba livia cli-mir-181a-2 precursor miRNA

Sequence

aucuuuggauagcuucagugAACAUUCAACGCUGUCGGUGAGUUugagaacuacaaaaACCAUCGACCGUUGACUGUACCuugagguuuaucacaaaccc
...(((((((((((((((.(.(((.((((((..(((((((.((((...........))))))))))))))))).))).).)))))).))))).))))...

Structure

auc    -     -      u A   U      CU       A    gaga 
   uuug gauag cuucag g ACA UCAACG  GUCGGUG GUUu    a
   |||| ||||| |||||| | ||| ||||||  ||||||| ||||    c
   aaac cuauu ggaguu C UGU AGUUGC  CAGCUAC CAaa    u
ccc    a     u      C A   C      --       -    aaca

Annotation confidence Not enough data

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Genome context

KB375970.1: 919211-919310 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-181a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-181a-5p

Accession	MIMAT0038550
Description	Columba livia cli-miR-181a-5p mature miRNA
Sequence	21 - AACAUUCAACGCUGUCGGUGAGUU - 44
Evidence	experimental Illumina [1]

Mature cli-miR-181a-2-3p

Accession	MIMAT0038552
Description	Columba livia cli-miR-181a-2-3p mature miRNA
Sequence	59 - ACCAUCGACCGUUGACUGUACC - 80
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196